msw post

Post-acquisition data pipeline commands.

msw post clean

Remove known noise events from .msw.csv session files.

msw post clean --data-dir <path> --event <event_name> [--dry-run]

Flag	Description
--data-dir	Root directory to scan (recurses into subdirectories)
--event	Event string to filter out (e.g. Port4)
--dry-run	Report what would be removed without modifying files

Files are backed up as <file>.bak.<timestamp> before modification. Files with no matching rows are left unchanged and do not produce a backup.

Example

# Preview what would be removed
msw post clean --data-dir ~/data/mouse001 --event Port4 --dry-run

# Apply
msw post clean --data-dir ~/data/mouse001 --event Port4

msw post run

Run the full post-acquisition pipeline (rsync, h264 conversion, remote upload).

msw post run [options]

Calls scripts/run_post_acquisition_tasks.sh. Requires --provision-scripts pointing at the provision_rpi scripts directory.

Flag	Description
--central-data	Central data directory
--local-data	Local acquisition data directory
--provision-scripts	Path to provision_rpi scripts
--rpi-group	RPi group name
--setup-group	Setup group name
--skip-upload	Skip remote upload step
--skip-rpi	Skip RPi sync step
--skip-setups	Skip setup-machine sync step
--skip-h264	Skip h264 conversion
--skip-msw-clean	Skip the msw post clean noise-event cleaning step
--dry-run	Pass --dry-run through to the shell script